POB1 Top publications
Marczyk Michał,Mrukwa A.,Yau C.,Wolf D.,Chen Y.-Y.,Balassanian R.,Nanda R.,Parker B.A.,Krings G.,Sattar H.:Treatment EfficacyScore - continuous residual cancer burden-based metric to compare neoadjuvant chemotherapy efficacy between randomized trial arms inbreast cancer trials, Annals of Oncology, vol. 33, nr 8, 2022, s. 814-823,
Miodońska Zuzanna,Badura Paweł,Mocko Natalia:Noise-based acoustic features of Polish retroflex fricatives in children with normalpronunciation and speech disorder, Journal of Phonetics, ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, vol. 92, 2022, Numerartykułu: 101149, s. 1-16
Marczyk Michał,Gunasekharan Vignesh,Casadevall David,Qing Tao,Foldi Julia,Sehgal Raghav,Shan Naing Lin,Blenman Kim R.M.,O'Meara Tess A.,Umlauf Sheila:Comprehensive Analysis of Metabolic Isozyme Targets in Cancer, Cancer Research, AMER ASSOCCANCER RESEARCH, vol. 82, nr 9, 2022, s. 1698-1711
Blenman Kim R.M.,Marczyk Michał,Karn Thomas,Qing Tao,Li Xiaotong,Gunasekharan Vignesh,Yaghoobi Vesal,Bai Yalai,IbrahimEiman Y.,Park Tristen:Predictive markers of response to neoadjuvant durvalumab with nab-paclitaxel and dose-densedoxorubicin/cyclophosphamide in basal-like triple-negative breast cancer, Clinical Cancer Research, AMER ASSOC CANCER RESEARCH,vol. 28, nr 12, 2022, s. 2587-2597
Dufresne Yoann,Lemane Teo,Marijon Pierre,Peterlongo Pierre,Rahman Amatur,Kokot Marek,Medvedev Paul,Deorowicz Sebastian,Chikhi Rayan:The K-mer File Format: a standardized and compact disk representation of sets of k-mers, Bioinformatics, Oxford UniversityPress, vol. 38, nr 18, 2022, s. 4423-4425
Kokot Marek,Gudyś Adam,Li Heng,Deorowicz Sebastian:CoLoRd: compressing long reads, Nature Methods, NATURE RESEARCH, vol.19, nr 4, 2022, s. 441-444
Qing Tao,Mohsen Hussein,Cannataro Vincent L,Marczyk Michał,Rozenblit Mariya,Foldi Julia,Murray Michael,Townsend Jeffrey P,Kluger Yuval,Gerstein Mark:Cancer relevance of human genes, Journal of the National Cancer Institute, OXFORD UNIV PRESS INC, vol.114, nr 7, 2022, s. 988-995
Małysiak-Mrozek Bożena,Wieszok J.,Pedrycz W.,Ding W.,Mrozek Dariusz:High-efficient fuzzy querying with HiveQL for big datawarehousing, IEEE Transactions on Fuzzy Systems, vol. 30, nr 6, 2022, s. 1823-1837
Khan Jamshed,Kokot Marek,Deorowicz Sebastian,Patro Rob:Scalable, ultra-fast, and low-memory construction of compacted de Bruijngraphs with Cuttlefish 2, Genome Biology, BioMed Central, vol. 23, nr 1, 2022, Numer artykułu: 190, s. 1-32, D
Panda Swati,Hajra Sugato,Mistewicz Krystian,In-na Pichaya,Sahu Manisha,Rajaitha P. Mary,Kim Hoe Joon:Piezoelectric energyharvesting systems for biomedical applications, Nano Energy, Elsevier, vol. 100, 2022, Numer artykułu: 107514, s. 1-19
Lipus Justyna, Krukiewicz Katarzyna: Challenges and limitations of using charge storage capacity to assess capacitance of biomedical electrodes. Measurement, 2022, s.1-16,110822. DOI:10.1016/j.measurement.2022.110822
Pietrowska M., Żebrowska A., Gawin M. [et al.]: Proteomic profile of melanoma cell-derived small extracellular vesicles in patients plasma: a potential correlate of melanoma progression. Journal of Extracellular Vesicles, 2021, vol. 10, nr 4, s.1-14,:e12063. DOI:10.1002/jev2.12063
Gruca Aleksandra, Henzel Joanna, Kostorz Iwona [et al.]: MAINE: a web tool for multi-omics feature selection and rule-based data exploration. Bioinformatics, 2021. DOI:10.1093/bioinformatics/btab862
Hormaechea-Agulla D., Matatall K. A., Le D. T. [et al.]: Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling. Cell Stem Cell, 2021, vol. 28, nr 8, s.1428 - 1442.e6. DOI:10.1016/j.stem.2021.03.002
Capizzi Giacomo, Lo Sciuto G., Napoli C. [et al.]: Small lung nodules detection based on fuzzy-logic and probabilistic neural network with bio-inspired reinforcement learning. IEEE Transactions on Fuzzy Systems, 2020, vol. 28, nr 6, s.1178-1189. DOI:10.1109/TFUZZ.2019.2952831
Scheuermann L., Pei G., Domaraszewska T. [et al.]: Platelets restrict the oxidative burst in phagocytes and facilitate primary progressive tuberculosis. American Journal of Respiratory and Critical Care Medicine, 2020, vol. 202, nr 5, s.730-744. DOI:10.1164/rccm.201910-2063OC
Kazek-Kęsik Alicja, Nosol Agnieszka, Płonka Joanna [et al.]: Physico-chemical and biological evaluation of doxycycline loaded into hybrid oxide-polymer layer on Ti-Mo alloy. Bioactive Materials, 2020, vol. 5, nr 3, s.553-563. DOI:10.1016/j.bioactmat.2020.04.009
Eshraghi Mehdi, Ahmadi Mazaher, Afshar Saeid [et al.]: Enhancing autophagy in Alzheimer's disease through drug repositioning. Pharmacology & Therapeutics, 2022, vol. 237, s.1-37,108171. DOI:10.1016/j.pharmthera.2022.108171
Gładysz Magdalena Z., Stevanoska Maja, Włodarczyk-Biegun Małgorzata [et al.]: Breaking through the barrier: modelling and exploiting the physical microenvironment to enhance drug transport and efficacy. Advanced Drug Delivery Reviews, 2022, vol. 184, s.1-20,114183. DOI:10.1016/j.addr.2022.114183
Pei G., Żyła Joanna, He L. [et al.]: Cellular stress promotes NOD1/2-dependent inflammation via the endogenous metabolite sphingosine-1-phosphate. EMBO Journal, 2021, s.1-19,e106272. DOI:10.15252/embj.2020106272
Kahankova R., Martinek R., Jaros R., Behbehani K., Matonia Adam, Jeżewski Michał, Behar J. A.: A review of signal processing techniques for non-invasive fetal electrocardiography
IEEE Rev. Biomed. Eng. 2020 vol. 13 s. 51-73, DOI: 10.1109/RBME.2019.2938061
Bond J., Krzywoń Aleksandra, Lhermitte L., Roumier C., Roggy A., Belhocine M., Kheirallah A., Villarese P., Hypolite G., Garnache-Ottou F., Castaigne S., Boissel N., Asnafi V., Preudhomme C., Dombret H., Laurenti E., Macintyre E.: A transcriptomic continuum of differentiation arrest identifies myeloid interface acute leukemias with poor prognosis
Leukemia, 2020 in press s. 1-13, DOI: 10.1038/s41375-020-0965-z
Połap Dawid: An adaptive genetic algorithm as a supporting mechanism for microscopy image analysis in a cascade of convolution neural networks
Appl. Soft. Comput. 2020 vol. 97 Pt. B s. 1-11 (art. no.106824), DOI: 10.1016/j.asoc.2020.106824
Pietrowska Monika, Zebrowska Aneta, Gawin Marta, Marczak Łukasz, Sharma Priyanka, Mondal Sujan, Mika Justyna, Polańska Joanna, Ferrone Soldano, Kirkwood John M, Widlak Piotr, Whiteside Theresa L.: Proteomic profile of melanoma cell-derived small extracellular vesicles in patients’ plasma: a potential correlate of melanoma progression. J. Extracell. Vesicles 2021;10:e12063. DOI:10.1002/jev2.12063
Leśniak-Ziółkowska Katarzyna, Śmiga-Matuszowicz Monika, Blacha-Grzechnik Agata, Student Sebastian, Brzychczy-Włoch M., Krok-Borkowicz M., Pamuła E., Simka Wojciech, Kazek-Kęsik Alicja: Antibacterial and cytocompatible coatings based on poly(adipic anhydride) for a Ti alloy surface. Bioact. Mater. 2020 vol. 5 iss. 3 s. 709-720, DOI: 10.1016/j.bioactmat.2020.04.020
Amiri S., Dastghaib S., Ahmadi M., Mehrbod P., Khadem F., Behrouj H., Aghanoori M.-R., Machaj F., Ghamsari M., Rosik J., Hudecki A., Afkhami A., Hashemi M., Łos Marek, Mokarram P., Madrakian T., Ghavami S..: Betulin and its derivatives as novel compounds with different pharmacological effects. Biotechnol. Adv. 2020 vol. 38 s. 1-39 (art. no. 10740), DOI: 10.1016/j.biotechadv.2019.06.008
Bajkacz Sylwia, Felis Ewa, Kycia-Słocka Elżbieta*, Harnisz M., Korzeniewska E..: Development of a new SLE-SPE-HPLC-MS/MS method for the determination of selected antibiotics and their transformation products in anthropogenically altered solid environmental matrices. Sci. Total Environ. 2020 vol. 726 s. 1-13 (art. no. 138071), DOI: 10.1016/j.scitotenv.2020.138071
Drożdżal S., Rosik J., Lechowicz K., Machaj F., Kotfis K., Ghavami S., Łos Marek.: FDA approved drugs with pharmacotherapeutic potential for SARS-CoV-2 (COVID-19) therapy. Drug Resist. Update 2020 vol. 53 s. 1-14 (art. no. 100719), DOI: 10.1016/j.drup.2020.100719
Orujov F., Maskeliunas R., Damasevicius Robertas, Wei W.: Fuzzy based image edge detection algorithm for blood vessel detection in retinal images. Appl. Soft Comput. 2020 vol. 94 s. 1-10 (art. no. 106452), DOI: 10.1016/j.asoc.2020.106452
Qing T., Mohsen H., Marczyk Michał, Ye Y., O'Meara T., Zhao H., Towsend J. P., Gerstein M., Hatzis C., Kluger Y., Pusztai L.: Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden. Nature Commun. 2020 no. 11 s. 1-8 (art. no. 2438), DOI: 10.1038/s41467-020-16293-7
Dinh K. N., Jaksik Roman, Kimmel Marek, Lambert A., Tavare S..: Statistical inference for the evolutionary history of cancer genomes. Stat. Sci. 2020 vol. 35 nr 1 s. 129-144, DOI: 10.1214/19-STS7561
Papież Anna, Marczyk Michał, Polańska Joanna, Polański Andrzej.: BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm. Bioinformatics 2019 vol. 35 iss. 11 s. 1885-1892, DOI: 10.1093/bioinformatics/bty900
Deorowicz Sebastian, Walczyszyn Joanna, Debudaj-Grabysz Agnieszka*.: CoMSA: compression of protein multiple sequence alignment files. Bioinformatics 2019 vol. 35 iss. 2 s. 227-234, DOI: 10.1093/bioinformatics/bty619
Żyła Joanna, Marczyk Michał, Domaraszewska T., Kaufmann S. H. E., Polańska Joanna, Weiner J..: Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms. Bioinformatics 2019 vol. 35 iss. 24 s. 51465154 (art. no. btz447), DOI: 10.1093/bioinformatics/btz447
Sharifzad F., Ghavami S., Verdi J., Mardpour S., Sisakht M. M., Azizi Z., Taghikhani A., Łos Marek, Fakharian E., Ebrahimi M., Hamidieh A. A..: Glioblastoma cancer stem cell biology: Potential theranostic targets. Drug Resist. Update 2019 vol. 42 s. 35-45, DOI: 10.1016/j.drup.2018.03.003
Deorowicz Sebastian, Danek Agnieszka.: GTShark: genotype compression in large projects. Bioinformatics 2019 vol. 35 iss. 22 s. 4791-4793, DOI: 10.1093/bioinformatics/btz508
Deorowicz Sebastian, Debudaj-Grabysz Agnieszka*, Gudyś Adam, Grabowski S..: Whisper: read sorting allows robust mapping of DNA sequencing data. Bioinformatics 2019 vol. 35 iss. 12 s. 2043-2050, DOI: 10.1093/bioinformatics/bty927
